Illustrating Python via Examples from Bioinformatics¶
Contents:
- Illustrating Python via Bioinformatics Examples
- Basic Bioinformatics Examples in Python
- Counting Letters in DNA Strings
- Efficiency Assessment
- Verifying the Implementations
- Computing Frequencies
- Analyzing the Frequency Matrix
- Dot Plots from Pair of DNA Sequences
- Finding Base Frequencies
- Translating Genes into Proteins
- Some Humans Can Drink Milk, While Others Cannot
- Random Mutations of Genes
- Classes for DNA Analysis
- Exercises
- Exercise 1: Find pairs of characters
- Exercise 2: Count substrings
- Exercise 3: Allow different types for a function argument
- Exercise 4: Make a function more robust
- Exercise 5: Find proportion of bases inside/outside exons
- Exercise 6: Speed up Markov chain mutation
- Exercise 7: Extend the constructor in class Gene
- Basic Bioinformatics Examples in Python
