Examples on typesetting concerns (2)

• Footnotes must appear as part of the running text (e.g., sentences surrounded by parenthesis), since only a few formats support footnotes.
• Sphinx does not handle code blocks where the first line is indented.
• Multiple plots in the same figure: mount the plots to one image file and include this (montage for png, gif, jpeg; pdftk, pdfnup, and pdfcrop for PDF).
• If you need several equations numbered in an align environment, recall that Sphinx, Markdown, and MediaWiki cannot handle this, although they have LaTeX math support.
• Markdown tolerates labels in equations but cannot refer to them.